FORK-seq: Single molecule profiling of DNA replication

Methods in Molecular Biology, Springer Protocols

Magali Hennion, Jean-Michel Arbona, Bertrand Theulot, Benjamin Audit and Olivier Hyrien

 Test dataset

 Download the test dataset at TestDataSet.tgz.

 MD5 hashes :

File md5sum
TestDataSet/chr4.fa 0ded4901e83b67b06f439e5058053e18
TestDataSet/FORKSeq_combined.fast5 0fd8bba44b123e2c89914d74392b714f
TestDataSet/FORKSeq_combined.fastq dcc8199896b343f4daa33ea7f277c5e5

 Related paper

Replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing

Genome Biol 21, 125 (2020), https://doi.org/10.1186/s13059-020-02013-3

Magali Hennion, Jean-Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, BenoƮt Le Tallec, Florence Proux,
  Xia Wu, Elizaveta Novikova, Stefan Engelen, Arnaud Lemainque, Benjamin Audit and Olivier Hyrien